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April Publications

May 17, 2019

Below is a selection of papers that appeared in April 2019 reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey Cluster, Northeastern’s Discovery Cluster, and the Boston University Shared Computing Cluster all of which are housed at the MGHPCC.
B. A. Cook, Charlie Conroy, Pieter van Dokkum, and Joshua S. Speagle (2019), Measuring Star-formation Histories, Distances, and Metallicities with Pixel Color-Magnitude Diagrams I: Model Definition and Mock Tests, arXiv:1904.00011 [astro-Ph.GA]
Jing Guo, Guangyu Sun, Bowen Zhao, Ling Wang, Wenshan Hong, Vladimir A. Sidorov, Nvsen Ma, Qi Wu, Shiliang Li, Zi Yang Meng, Anders W. Sandvik, and Liling Sun(2019), Quantum phases of SrCu2(BO3)2 from high-pressure thermodynamics, arXiv:1904.09927 [cond-mat.str-el]
Paul Michael Kielstra and Marius Lemm (2019), On the Finite-size Lyapunov Exponent for the Schrodinger Operator with Skew-shift Potential, arXiv: 1904:08871 [math-ph]
Marius Lemm, Anders Sandvik, and Sibin Yang (2019), The AKLT model on a hexagonal chain is gapped, arXiv:1904.01043 [quant-ph]
Mariana Levi, Jeffrey K. Noel, Paul C. Whitford (2019), Studying ribosome dynamics with simplified models, Methods, doi: 10.1016/j.ymeth.2019.03.023
Ziqiang Lü, Haiying Gao, Jianshe Lei, Xiaotao Yang, Sampath Rathnayaka, Cong Li (2019), Crustal and upper mantle structure of the Tien Shan orogenic belt from full‐wave ambient noise tomography, Journal of Geophysical Research – Solid Earth, doi: 10.1029/2019JB017387
Dimitrios Maroudas and Brian D Wirth (2019), Atomic-scale modeling toward enabling models of surface nanostructure formation in plasma-facing materials, Current Opinion in Chemical Engineering, doi: 10.1016/j.coche.2019.03.001
Julian B. Mu˜noz (2019), A Standard Ruler at Cosmic Dawn, arXiv:1904:07868 [astro-ph.CO]
Julian B. Mu˜noz (2019), Velocity-induced Acoustic Oscillations at Cosmic Dawn, arXiv:1904:07881 [astro-ph.CO]
Deena A. Rennerfeldt, Joana S. Raminhos, Samantha M. Leff, Pristinavae Manning, Krystyn J. Van Vliet (2019), Emergent heterogeneity in putative mesenchymal stem cell colonies: Single-cell time-lapsed analysis, PLOS One, doi: 10.1371/journal.pone.0213452
Timothy B. Sackton, Phil Grayson, Alison Cloutier, Zhirui Hu, Jun S. Liu, Nicole E. Wheeler, Paul P. Gardner, Julia A. Clarke, Allan J. Baker, Michele Clamp, Scott V. Edwards (2019), Convergent regulatory evolution and loss of flight in paleognathous birds, Science, doi: 10.1126/science.aat7244
Waleed Tahir, Jiabei Zhu, Sreekanth Kura, Xiaojun Cheng, David Boas, and Lei Tian (2019), A Deep Learning Approach to 3D Segmentation of Brain Vasculature, in Biophotonics Congress: Optics in the Life Sciences Congress 2019 (BODA,BRAIN,NTM,OMA,OMP), The Optical Society (Optical Society of America, 2019), paper BT2A.6.
Bowen Zhao, Phillip Weinberg and Anders W. Sandvik (2019), Symmetry-enhanced discontinuous phase transition in a two-dimensional quantum magnet, Nature Physics, doi: s41567-019-0484-x
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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