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August 2025 Publications

September 3, 2025

Electrically-tunable superlattice bilayer graphene? Alzheimer’s disease biomarker assessment? Generative reaction mechanism prediction? A selection of recent publications featuring research using the MGHPCC.

Aggarwal, Sarika et al (2025), Severe flooding and cause-specific hospitalisation among older adults in the USA: a retrospective matched cohort analysis, The Lancet Planetary Health, doi: 10.1016/S2542-5196(25)00132-9 

Amoudruz, Lucas et al (2025), Ising energy model for the stochastic prediction of tumor islets, arXiv: 2508.20804 [physics.med-ph] 

Atlam, Nabil et al (2025), Giant Shift Current in Electrically-Tunable Superlattice Bilayer Graphene, arXiv: 2508.09465 [cond-mat.mes-hall] 

Bachar, Luca Gomez et al (2025), Evolution of linear matter perturbations with error bounded bundle physics-informed neural networks, arXiv: 2508.08443 [astro-ph.CO] 

Bhattacharya, Arindam et al (2025), Observable Optimization for Precision Theory: Machine Learning Energy Correlators, arXiv: 2508.10988 [hep-ph] 

Chakraborty, Joheen et al (2025), Prospects for EMRI/MBH parameter estimation using Quasi-Periodic Eruption timings: short-timescale analysis, arXiv: 2508.20162 [astro-ph.HE]  

Chan, A., Kirtane, A.R., Qu, Q.R. et al (2025), Designing lipid nanoparticles using a transformer-based neural network, Nat. Nanotechnol., doi: 10.1038/s41565-025-01975-4 

Chandra, Vedant et al (2025), Mapping the Distant and Metal-Poor Milky Way with SDSS-V, arXiv: 2508.00978 [astro-ph.GA]  

Justin Finkel and Paul A. O’Gorman (2025), Boosting Ensembles for Statistics of Tails at Conditionally Optimal, arXiv:2507.22310 [physics.ao-ph] 

Justin Finkel and Paul A. O’Gorman (2025), Rare event sampling for moving targets: extremes of temperature and daily precipitation in a general circulation model, arXiv: 2508.13120 [physics.ao-ph] 

Marquez, Garcia et al (2025), Environment90m – globally standardized environmental variables for spatial freshwater biodiversity science at high spatial resolution, Earth Syst. Sci. Data Discuss., doi: 10.5194/essd-2025-399

Jasodanand, V.H., Kowshik, S.S., Puducheri, S. et al (2025), AI-driven fusion of multimodal data for Alzheimer’s disease biomarker assessment, Nat Commun, doi: 10.1038/s41467-025-62590-4 

Ji, Kaihua and Alain Karma (2025), Parity Breaking at Faceted Crystal Growth Fronts during Ice Templating, arXiv: 2508.18403 [cond-mat.mtrl-sci] 

Ji, Kaihua and Alain Karma (2025), Phase-Field Model of Freeze Casting, arXiv: 2508.18416 [cond-mat.mtrl-sci]  

Joung, J.F., Fong, M.H., Casetti, N. et al. (2025), Electron flow matching for generative reaction mechanism prediction, Nature, doi: 10.1038/s41586-025-09426-9 

Krishnan, Aarti et al (2025), A generative deep learning approach to de novo antibiotic design, Cell, doi: 10.1016/j.cell.2025.07.033 

Legault, Robin et al (2025), Integrated Bus Fleet Electrification Planning Through Accelerated Logic-Based Benders Decomposition and Restriction Heuristics, arXiv: 2508.05863 [math.OC] 

Liveoak et al (2025), Self-consistent Dynamical and Chaotic Tides in the REBOUNDx Framework, ApJ, doi: 10.3847/1538-4357/adefe7 

Makhija, Neha and Wolfgang Gatterbauer (2025), Is Integer Linear Programming All You Need for Deletion Propagation? A Unified and Practical Approach for Generalized Deletion Propagation, PVLDB, doi:10.14778/3742728.3742756 

Merk, Liana N et al (2025), Presence of group II introns in phage genomes, Nucleic Acids Research, doi: 10.1093/nar/gkaf761 

Novoseltseva, Anna et al (2025), Imaging myelin degradation in ex vivo prefrontal cortex tissue blocks in Alzheimer’s disease and chronic traumatic encephalopathy, Alzheimer's and Dementia, doi: 10.1002/alz.70582

Randolph C., Michaleas A. and Ricke D.O .(2025), Large language models for closed-library multi-document query, test generation, and evaluation, Front. Artif. Intell., doi: 10.3389/frai.2025.1592013 

Rashid, Sharaf et al (2025), Evaluating Prompt Injection Attacks with LSTM-Based Generative Adversarial Networks: A Lightweight Alternative to Large Language Models, Mach. Learn. Knowl. Extr., doi: 10.3390/make7030077 

Reddy, Aidan P. and Liang Fu (2025), Quantum melting a Wigner crystal into Hall liquids, arXiv: 2508.21000 [cond-mat.mes-hall] 

Sakurada, Tomoaki et al (2025), Systematic Bandgap Engineering of a 2D Organic–Inorganic Chalcogenide Semiconductor via Ligand Modification, J. Am. Chem. Soc., doi: 10.1021/jacs.5c07989 

Sam, Alan Sam et al (2025), Beyond Pairwise Interactions: How Interfacial Polarization Modulates Water Flow in Graphene Nanochannels, ACS Surfaces, Interfaces, and Applications, doi: 10.1021/acsami.5c10054 

Schumm, Gabe et al (2025), Single-particle dispersion and density of states of the half-filled two-dimensional Hubbard model, Phys. Rev. B, doi: 10.1103/8dnp-w7c6 

Siew, P.M., Solera, H.E., Lavezzi, G. et al (2025), AI Challenge for Satellite Pattern-of-Life Identification: Dataset, Design and Results, J Astronaut Sci, doi: 10.1007/s40295-025-00515-5 

Tariq, Ifrah and Ernest Fraenkel (2025), Biologically Disentangled Multi-Omic Modeling Reveals Mechanistic Insights into Pan-Cancer Immunotherapy Resistance, arXiv: 2508.18638 [cs.LG]

Wang, Peidong et al (2025), Ocean Outgassing of Methyl Chloroform as an Underestimated Source of Emission, ESS Open Archive, doi: 10.22541/essoar.175510608.85731700

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Social Capital and Economic Mobility
Simulating Large Biomolecular Assemblies
Surface Behavior
Revolutionizing Materials Design with Computational Modeling
Quantum Computing in Renewable Energy Development
Microplastic-Free by Design
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
Bone Ratios and Big Data
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