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February 2023 Publications

March 6, 2023

Cooper pairings in superconducting Dirac semimetals? Photoswitchable ligands and photodruggable proteins? Starburst galaxy mergers? This month’s selection of publications featuring research using the MGHPCC.

Auer, Benjamin et al (2023), Mesh modeling of system geometry and anatomy phantoms for realistic GATE simulations and their inclusion in SPECT reconstruction, IOPScience, Physics in Medicine and Biology, doi: 10.1088/1361-6560/acbde2

Axelrod, Simon et al (2023), Mapping the space of photoswitchable ligands and photodruggable proteins with computational modeling, arXiv: 2302.11490 [physics.chem-ph]

Bulekov, Alexander et al (2023), No Grammar, No Problem: Towards Fuzzing the Linux Kernel without System-Call Descriptions, Network and Distributed System Security (NDSS) Symposium 2023, doi: 10.14722/ndss.2023.24688

Card, Daren C. et al (2023), Genome Evolution and the Future of Phylogenomics of Non-Avian Reptiles, Animals, doi: 10.3390/ani13030471

Chaudhary, Gaurav et al (2023), Learning to write with the fluid rope trick, arXiv: 2302.05853 [physics.flu-dyn]

Chaves, Anderson S. et al (2023), Semiclassical Electron and Phonon Transport from First Principles: Application to Layered Thermoelectrics, arXiv: 302.00202 [ cond-mat.mtrl-sci]

He, Hao et al (2023), Molecular gas and star formation in nearby starburst galaxy mergers, arXiv: 2301.13250 [astro-ph.GA]

He, Qilin et al (2023), Grafting-To and From for Multiplexed Chemical-Warfare-Agent Responsive Polymer Brushes, Chem. Mater., doi: 10.1021/acs.chemmater.2c03405

Kadek, Marius et al (2023), Band structures and Z2 invariants of 2D transition metal dichalcogenide monolayers from fully-relativistic Dirac–Kohn–Sham theory using Gaussian-type orbitals, arXiv: 2302.00041 [cond-mat.strl-sci]

Mehta, R.S. et al (2023), Gut microbial metabolism of 5-ASA diminishes its clinical efficacy in inflammatory bowel disease, Nat. Med., doi: 10.1038/s41591-023-02217-7

Mohebujjaman, Muhammad et al (2023), Scalability analysis of direct and iterative solvers used to model charging of superconducting pancake solenoids, IOPScience, Engineering Research Express doi: 10.1088/2631-8695/acbd85

Nabizadeh, Mohammad et al (2023), Network physics of attractive colloidal gels: Resilience, Rigidity, and Phase Diagram, arXiv: 2301.13027 [cond-matt.soft]

Stuyver, Thijs and Connor Coley (2023), Machine Learning-Guided Computational Screening of New Candidate Reactions with High Bioorthogonal Click Potential, Chem. Eur. J., doi: 10.1002/chem.202300387

Tec, Mauricio et al (2023), Causal Shift-Response Functions with Neural Networks: The Health Benefits of Lowering Air Quality Standards in the US, arXiv: 2302.02560 [cs.LG]

Vuong, Van-Quan and Qiang Cui (2023), Reparameterization of the Chemical-Potential Equalization Model with DFTB3: A Practical Balance Between Accuracy and Transferability, The Journal of Chemical Physics, doi: 10.1063/5.0132903

Wolf, Lawrence and Walter Thiel (2022), Computational Investigations into the Mechanisms of Trans-Selective Hydrogenation and Hydrometalation of Alkynes, Organometallics, doi: 10.1021/bk-2019-1317.ch003

Xu, Haowei et al (2023), Two-Photon Interface of Nuclear Spins Based on the Optonuclear Quadrupolar Effect, Physical Review X, doi: 10.1103/PhysRevX.13.011017

Yahyavi, Mohammad et al (2023), Transverse circular photogalvanic effect associated with Lorentz-violating Weyl fermions, arXiv: 2301.00958

Yang, Xian P. et al (2023), Coexistence of bulk-nodal and surface-nodeless Cooper pairings in a superconducting Dirac semimetal, arXiv: 2301.01402

Yu, Houlin et al (2023), Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex, biorXiv, doi: 10.1101/2023.02.09.527873

Zavatone-Veth, Jacob A. et al (2023), Neural networks learn to magnify areas near decision boundaries, arXiv: 2301.11375 [cs.LG]

Zhu, Yanglin et al (2023), Surprisingly large anomalous Hall effect and giant negative magnetoresistance in half topological semimetals, arXiv: 2301.01704

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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