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February Publications

March 2, 2020

Below is a selection of papers that appeared in February 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT’s Engaging Cluster all of which are housed at the MGHPCC.

Weronika Jasinska, Michael Manhart, Jesse Lerner, Louis Gauthier, Adrian W. R. Serohijos and Shimon Bershtein (2020), Chromosomal barcoding of E. coli populations reveals lineage diversity dynamics at high resolution, Nat Ecol Evol, doi: 10.1038/s41559-020-1103-z
Dibyendu Kumar Das, Uriel Bulow, William E. Diehl, Natasha D. Durham, Fernando Senjobe, Kartik Chandran, Jeremy Luban, James B. Munro (2020), Conformational changes in the Ebola virus membrane fusion machine induced by pH, Ca2+, and receptor binding, PLOS Biology, doi: 10.1371/journal.pbio.3000626
A. Soliman et al (2020), Optical Design and Characterization of 40-GHz Detector and Module for the BICEP Array, arXiv: 2002.05254 [astro-ph.IM]
T. St. Germaine et al (2020), Optical characterization of the Keck Array and BICEP3 CMB Polarimeters from 2016 to 2019, arXiv: 2002.05197 [astro-ph.IM]
Jun Takahashi and Anders W. Sandvik (2020), Valence-bond solids, vestigial order, and emergent SO(5) symmetry in a two-dimensional quantum magnet, arXiv: 2001.10045 [cond-mat.str-el]
Xiaowei Wang, Yuyu Li, Reyhaneh Toufanian, Leonard C. Kogos, Allison M. Dennis, Roberto Paiella (2020), Geometrically Tunable Beamed Light Emission from a Quantum‐Dot Ensemble Near a Gradient Metasurface, Advanced Optical Materials, doi: 10.1002/adom.201901951
Mahdieh Yazdani, Guohui Zhang, Zhiguang Jia, Jingyi Shi, Jianmin Cui, and Jianhan Chen (2020), Nonspecific Membrane Interactions Can Modulate BK Channel Activation, bioRxiv: 2020/02/06/2020.02.05.936161
C. Zhang et al (2020), Characterizing the Sensitivity of 40 GHz TES Bolometers for BICEP Array, arXiv:2002.05219 [astro-ph.IM]
Lei Zhang, Justin A. Reyes, Stefanos Kourtis, Claudio Chamon, Eduardo R. Mucciolo, and Andrei E. Ruckenstein (2020), Nonuniversal entanglement level statistics in projection-driven quantum circuits, arXiv: 2001.11428 [cond-mat.stat-mech]
Yong Zhang, He Yang, David Turra, Shiguo Zhou, Dilay Hazal Ayhan, Gregory A. DeIulio, Li Guo, Karen Broz, Nathan Wiederhold, Jeffrey J. Coleman, Kerry O’ Donnell, Ilan Youngster, Alexander J. McAdam, Sergey Savinov, Terrance Shea, Sarah Young, Qiandong Zeng, Martijn Rep, Eric Pearlman, David C. Schwartz, Antonio Di Pietro, H. Corby Kistler & Li-Jun Ma  (2020), The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes, Nature Communications Biology, doi: 10.1038/s42003-020-0770-2
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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