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January Publications

February 1, 2021

Identifying the US county-by-county COVID-19 burden? Multicolor polymeric carbon dots? Power system state estimation? Modeling the Somaliland pastoralist movement? This month’s selection of publications featuring research using the MGHPCC.

Amin Aboubrahim, Pran Nath and Raza M. Syed (2021), Corrections to Yukawa couplings from higher dimensional operators in a natural SUSY SO(10) and HL-LHC implications, Journal of High Energy Physics, doi: 10.1007/JHEP01(2021)047
Shi Jun Ang, Wujie Wang, Daniel Schwalbe-Koda, Simon Axelrod, Rafael Gómez-Bombarelli (2021),
Active learning accelerates ab initio molecular dynamics on reactive energy surfaces, Chem, doi: 10.1016/j.chempr.2020.12.009
A. Ashtari Esfahani et al. (2021), Bayesian Analysis of a Future Beta Decay Experiment’s Sensitivity to Neutrino Mass Scale and Order, arXiv: 2012.14341 [physics.data-an]
Deniz Aybas et al. (2021), Search for axion-like dark matter using solid-state nuclear magnetic resonance, arXiv:2101.01241 [hep-ex]
Dimitris Bertsimas, Jack Dunn, Yuchen Wang (2021), Near-optimal Nonlinear Regression Trees, Operations Research Letters, doi: 10.1016/j.orl.2021.01.002
Sebastian Bohr, Jesús Zavala, Francis-Yan Cyr-Racine and Mark Vogelsberger (2021), The halo mass function and inner structure of ETHOS haloes at high redshift, arXiv: 2101.08790 [astro-ph.CO]
Jonathan Chamberlain, Eran Simhon, David Starobinski (2021), Preemptible queues with advance reservations: Strategic behavior and revenue management, European Journal of Operational Research, doi: 10.1016/j.ejor.2020.12.044
Qiang Cui, Tanmoy Pal, and Luke Xie (2021), Biomolecular QM/MM Simulations: What Are Some of the “Burning Issues”?, J. Phys. Chem. B, doi: 10.1021/acs.jpcb.0c09898
Esteban Dodero-Rojas, Jose N. Onuchic, Paul C. Whitford (2021), Sterically-Confined Rearrangements of SARS-CoV-2 Spike Protein Control Cell Invasion, bioRxiv, doi: 10.1101/2021.01.18.427189
Donmez, Bilgehan (2020), Topology Error Detection in Power System State Estimation, Northeastern University Doctoral Dissertation, Proquest 28261370
Harms, Nathan D. (2020), Improving Detailed Kinetic Models through Automated Transition State Theory Calculations, Northeastern University Doctoral Dissertation, Proquest 28260517
Shao-Kai Jian, Zhi-Cheng Yang, Zhen Bi, and Xiao Chen (2021), Yang-Lee edge singularity triggered entanglement transition, arXiv:2101.04115 [cond-mat.str-el]
Aaron Kucy, Michael Esterman, James Capella, Allison Green, Mai Uchida, Joseph Biederman, John D.E. Gabrieli, Eve M. Valera, Susan Whitfield-Gabrieli (2021), Generalizable prediction of stimulus-independent, task-unrelated thought from functional brain networks, biorXiv, doi: 10.1101/2021.01.25.428126
Daniel Li, Sheila M. Gaynor, Corbin Quick, Jarvis T. Chen, Briana J.K. Stephenson, Brent A. Coull, Xihong Lin (2021), Identifying US Counties with High Cumulative COVID-19 Burden and Their Characteristics, medRxiv, doi: 10.1101/2020.12.02.20234989
Longchamps RJ et al (2021), Genome-wide analysis of mitochondrial DNA copy number reveals multiple loci implicated in nucleotide metabolism, platelet activation, and megakaryocyte proliferation, biorXiv, doi: 10.1101/2021.01.25.428086
Erica L. Nelson, Saira A. Khan, Swapna Thorve, P. Gregg Greenough (2021), Modeling pastoralist movement in response to environmental variables and conflict in Somaliland: Combining agent-based modeling and geospatial data, PLOS ONE, doi: 10.1371/journal.pone.0244185
Sha Sha et al (2021), Characterization of dynamic regulation in Chinese hamster ovary (CHO) cell cultures in the late exponential phase, Science Direct, doi: 10.1016/j.bej.2020.107897
Haoyue Wang, Haihao Lu, Rahul Mazumder (2021), Frank-Wolfe Methods with an Unbounded Feasible Region and Applications to Structured Learning, arXiv:2012.15361 [math.OC]
Biwei Xiao et al. (2021), Vacancy‐Enabled O3 Phase Stabilization for Manganese‐rich Layered Sodium Cathodes, Angewandte Chemie, doi: 10.1002/anie.20201633
Bo Zhi et al. (2020), Multicolor polymeric carbon dots: synthesis, separation and polyamide-supported molecular fluorescence, Chemical Science, doi: 10.1039/d0sc05743f
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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