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July Publications

August 2, 2021

Cosmological constraints on Dark Matter interactions with Ordinary Matter? Connections between extreme precipitation events in the Northeast US, Atlantic variability, and climate change? Bayesian optimization of categorical variables informed by expert knowledge? This month’s selection of publications featuring research using the MGHPCC.

Sebastian Bohr (2021), Dark Acoustic Oscillations in Structure Formation: The High Redshift Universe, Doctoral Dissertation University of Iceland,

Manuel A. Buen-Abad, Rouven Essig, David McKeen, Yi-Ming Zhong (2021), Cosmological Constraints on Dark Matter Interactions with Ordinary Matter, arXiv:2107.12377 [astro-ph.CO]

Qiuming Chen, Yanchang Wu, Zhaolin Huang, Wenli Zhang, and Wanmeng Mu (2021), Molecular Characterization of a Mesophilic Cellobiose 2-Epimerase That Maintains a High Catalytic Efficiency at Low Temperatures, Journal of Agricultural and Food Chemistry Article ASAP, doi: 10.1021/acs.jafc.1c02025

William Fitzhugh, Xi Chen, Yichao Wang, Luhan Ye and Xin Li (2021), Solid–electrolyte-interphase design in constrained ensemble for solid-state batteries, Energy Environ. Sci., doi: 10.1039/D1EE00754H

Anyuan Gao et al (2021), Layer Hall effect in a 2D topological Axion antiferromagnet, arXiv:2107.10233 [cond.mat.mtrl-sci]

Florian Häse, Matteo Aldeghi, Riley J. Hickman, Loïc M. Roch, and Alán Aspuru-Guzik (2021), Gryffin: An algorithm for Bayesian optimization of categorical variables informed by expert knowledge, Applied Physics Reviews, doi: 10.1063/5.0048164

Huanping Huang et al (2021), Rise in Northeast US extreme precipitation caused by Atlantic variability and climate change, Weather and Climate Extremes, doi: 10.1016/j.wace.2021.100351

Weiwen Ji, Alexander Robel, Eli Tziperman, Jun Yang (2021), Laurentide Ice Saddle Mergers Drive Rapid Sea Level Drops During Glaciations, Geophysical Research Letters, doi: 10.1029/2021GL094263

Ned Kleiner, Pak Wah Chan, Lei Wang, Ding Ma, Zhiming Kuang (2021), Effects of Climate Model Mean-State Bias on Blocking Underestimation, Geophysical Research Letters, doi: 10.1029/2021GL094129

Benjamin Levy, Kristen Windoloski, John Ludlam (2021), Matrix and agent-based modeling of threats to a diamond-backed terrapin population, Mathematical Biosciences, doi: 10.1016/j.mbs.2021.108672

Shao-Xiong Lennon Luo, Richard Y. Liu, Sungsik Lee, and Timothy M. Swager (2021), Electrocatalytic Isoxazoline–Nanocarbon Metal Complexes, Journal of the American Chemical Society, doi: 10.1021/jacs.1c05439

Smarak Maity et al. (2021), Coherent coupling of mechanics to a single nuclear spin, arXiv: 2107.10961 [quant.ph]

Taraknath Mandal, Saverio E. Spagnolie, Anjon Audhya, Qiang Cui (2021), Protein Induced Membrane Curvature in Coarse-Grained Simulations: Binding Interface, Insertion Depth and Lipid Spontaneous Curvature, Biophysical Journal, doi: 10.1016/j.bpj.2021.05.029

Michael T. Payne, Constanze N. Neumann, Eli Stavitski, and Mircea Dincǎ (2021), Complexes of Platinum Group Metals with a Conformationally Locked Scorpionate in a Metal–Organic Framework: An Unusually Close Apical Interaction of Palladium(II), Inorganic Chemistry Article ASAP, doi: 10.1021/acs.inorgchem.1c00941

A. Molavi Tabrizi et al, (2021), Spatiotemporal Organization of Electromechanical Phase Singularities during High-Frequency Cardiac Arrhythmias, arXiv: 2107.09223 [cond-mat.soft]

Waleed Tahir and Lei Tian (2021), Adaptive 3D descattering with a dynamic synthesis network, arXiv: 2107.00484 [eess.IV]

Haoyue Wang, Shibal Ibrahim, Rahul Mazumder (2021), Nonparametric Finite Mixture Models with Possible Shape Constraints: A Cubic Newton Approach, arXiv: 2107.08535 [stats.CO]

Zhi-Cheng Yang, Yaodong Li, Matthew P. A. Fisher, and Xiao Chen (2021), Entanglement phase transitions in random stabilizer tensor networks, arXiv: 2107.12376 [cond.mat.stat-mech]

Yancong Zhang, Kelsey N Thompson, Curtis Huttenhower, Eric A Franzosa (2021), Statistical approaches for differential expression analysis in metatranscriptomics, Bioinformatics, doi: 10.1093/bioinformatics/btab327

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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