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June Publications

July 7, 2021

The impact of dust on cosmic microwave background radiation measurements? Waiting policies for cloud-enabled schedulers? Staphylococcal nuclease mutants? This month’s selection of publications featuring research using the MGHPCC.

T. Aarrestad et al (2021), The Dark Machines Anomaly Score Challenge: Benchmark Data and Model Independent Event Classification for the Large Hadron Collider, arXiv: 2105:14027 [hep.ph]
P. Ambati, N. Bashir, D. Irwin, and P. Shenoy (2021), Modeling and Analyzing Waiting Policies for Cloud-Enabled Schedulers, IEEE Transactions on Parallel and Distributed Systems, vol. 32, no. 12, pp. 3081-3100, 1 Dec. 2021, doi: 10.1109/TPDS.2021.3086270
Matteo Braglia, Xingang Chen, and Dhiraj Kumar Hazra (2021), Uncovering the History of Cosmic Inflation from Anomalies in Cosmic Microwave Background Spectra, arXiv: 2106.07546 [astro-ph.CO]
Alberto Concellón, Ru-Qiang Lu, Kosuke Yoshinaga, Hsiu-Fu Hsu, and Timothy M. Swager (2021), Electric-Field-Induced Chirality in Columnar Liquid Crystals, J. Am. Chem. Soc. , doi: 10.1021/jacs.1c05268
Olivia Curtis, Tereasa G. Brainerd, Anthony Hernandez (2021), Cosmic Voids in Generated N-body Simulations, arXiv: 2106.04014 [astro-ph.CO]
Jiahua Deng and Qiang Cui (2021), Reverse Protonation of Buried Ion-Pairs in Staphylococcal Nuclease Mutants, J. Chem. Theory Comput., doi: 10.1021/acs.jctc.1c00355
Benjamin E. Goulet-Scott, Austin G. Garner, Robin Hopkins (2021), Genomic analyses overturn two long-standing homoploid hybrid speciation hypotheses, Evolution, doi: 10.1111/evo.14279
Mark T. Gregory, Yang Gao, Qiang Cui, and Wei Yang (2021), Multiple deprotonation paths of the nucleophile 3′-OH in the DNA synthesis reaction, PNAS, doi: 10.1073/pnas.2103990118
Harshil Kamdar, Charlie Conroy, Yuan-Sen Ting (2021), Stellar Streams in the Galactic Disk: Predicted Lifetimes and Their Utility in Measuring the Galactic Potential, arXiv: 2106.02050 [astro-ph.GA]
Qiaohao Liang et al (2021), Benchmarking the Performance of Bayesian Optimization Across Multiple Experimental Materials Science Domains, arXiv: 2106.01309 [cond-mat.mtr-sci]
Anindita Maiti, Keegan Stoner, and James Halverson (2021), Symmetry-via-Duality: Invariant Neural Network Densities from Parameter-Space Correlators, arXiv: 2106.00694 [cs.LG]
Rahul Mazumder and Haoyue Wang (2021), Linear regression with partially mismatched data: local search with theoretical guarantees, arXiv: 2106.02175 [math.OC]
Mazzoni, Fernando (2021), Time Scales in Nucleation of Active Matter, University of Massachusetts, Lowell, Masters Thesis
Juan Moles, Tauana Junqueira Cunha, Sarah Lemer, David J Combosch, Gonzalo Giribet (2021), Tightening the girdle: phylotranscriptomics of Polyplacophora, Journal of Molluscan Studies, doi: 10.1093/mollus/eyab019
Oner, Ahmet (2021), Improving the Resilience of the Power Grid, Northeastern University Doctoral dissertation
George V. Papamokos, George Tziatzos, Dimitrios G. Papageorgiou, Spyros Georgatos, Efthimios Kaxiras, and Anastasia S. Politou (2021), Progressive Phosphorylation Modulates the Self-Association of a Variably Modified Histone H3 Peptide, Front. Mol. Biosci., doi: 10.3389/fmolb.2021.698182
Junjie Shi et al (2021), Formation of a Ti–Cu(111) single atom alloy: Structure and CO binding, The Journal of Chemical Physics, doi: 10.1063/5.0050800
Jonathan Vandermause et al (2021), Active learning of reactive Bayesian force fields: Application to heterogeneous hydrogen-platinum catalysis dynamics, ArXiv: 2106.01949 [cond-mat.mtrl-sci]
Wolfe, Pierre-François W. (2021), Enabling Secure Multi-Party Computation with FPGAS in the Datacenter, Boston University Doctoral Dissertation,
Yujing Yan, Charles C Davis, Dimitar Dimitrov, Zhiheng Wang, Carsten Rahbek, Michael Krabbe Borregaard (2021), Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils, Systematic Biology, doi: 10.1093/sysbio/syab042
Linda Ye et al (2021), A flat band-induced correlated kagome metal, arXiv: 2106.10824 [cond-mat.mtrl-sci]
Ioana A. Zelko and Douglas P. Finkbeiner (2021), Impact of Dust on Spectral Distortion Measurements of the Cosmic Microwave Background, The Astrophysical Journal, doi: 10.3847/1538-4357/abfa12
Xi Zhang et al (2021), Gate-tunable Veselago Interference in a Bipolar Graphene Microcavity, arXiv: 2106.09651
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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