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June/July 2023 Publications

August 1, 2023

Outspiralling Binary Stars? Tropomyosin pivoting? Pulsed-power-driven exploding planar wire arrays? A selection of recent publications featuring research using the MGHPCC.

Stefanos Aretakis et al (2023), An observational signature for extremal black holes, arXiv: 2307.03963 [gr-qc] 

Matthew L. N. Ashby et al (2023), The SPHEREx Target List of Ice Sources (SPLICES), The Astrophysical Journal, doi: 10.3847/1538-4357/acc86b 

Auger, Joshua (2023), Quantitative Assessment and Mechanical Consequences of Bone Density and Microstructure in Hip Osteoarthritis, Boston University ProQuest Dissertations Publishing

Sylvia Biscoveanu, Kyle Kremer, and Eric Thrane (2023), Probing the Efficiency of Tidal Synchronization in Outspiralling Double White Dwarf Binaries with LISA, The Astrophysical Journal, doi: 10.3847/1538-4357/acc585 

Sayandeep Biswas et al (2023), Predicting Critical Properties and Acentric Factors of Fluids Using Multitask Machine Learning, J. Chem. Inf. Model., doi: 10.1021/acs.jcim.3c00546 

Marie Breeur et al (2023), Optimal transport for automatic alignment of untargeted metabolomic data, arXiv: 2306.03218 [q-bio.QM] 

Vedant Chandra et al (2023), Discovery of the Magellanic Stellar Stream Out to 100 Kiloparsecs, arXiv: 2306.15179 [astro-ph.GA] 

Hamza Tahir Chaudhry et al (2023), Long Sequence Hopfield Memory, arXiv: 2306.04532 [cs.NE] 

Richard Rabideau Childers et al (2023), Selection on size has generated distinctive paired wing flight systems for butterfly flight and migration, via ResearchSquare; doi: 10.21203/rs.3.rs-2968821 

Tauana J. Canha et al (2023), Rampant loss of universal metazoan genes revealed by a chromosome-level genome assembly of the parasitic Nematomorpha, Current Biology, doi: 10.1016/j.cub.2023.07.003 

Yunsie Chung and William H. Green (2023), Machine learning from quantum chemistry to predict experimental solvent effects on reaction rates, ChemRxiv, doi: 10.26434/chemrxiv-2023-f20bg 

R. Datta et al (2023), Plasma flows during the ablation stage of an over-massed pulsed-power-driven exploding planar wire array, arXiv:2306.03304 [physics.plasma-ph] 

Yunsie Chung and William H. Green (2023), Computing Kinetic Solvent Effects and Liquid Phase Rate Constants Using Quantum Chemistry and COSMO-RS Methods, The Journal of Physical Chemistry A, doi: 10.1021/acs.jpca.3c01825 

Michael S. Dimitriyev, Abhiram Reddy, and Gregory M. Grason (2023), Medial packing, frustration and competing network phases in strongly-segregated block copolymers, arXiv: 2306.02598 [cond-mat.soft]

Sebastian D. Eastham et al (2023), Global impacts of aviation on air quality evaluated at high resolution, EGUsphere, doi: 10.5194/egusphere-2023-695 

Derek Egolf and Stavros Tripakis (2023), Synthesis of Distributed Protocols by Enumeration Modulo Isomorphisms, arXiv: 2306.02967 [cs.LO] 

Anyuan Gao et al (2023), Quantum metric nonlinear Hall effect in a topological Enumeration Modulo Isomorphisms, arXiv: 2306.09575 [cond-mat.mes-hall] 

Grossman-Ponemon, B.E., Mesgarnejad, A. & Karma (2023), Topology-enhanced mechanical stability of swelling nanoporous electrodes, npj Comput. Mater., doi: 10.1038/s41524-023-01047-y

Dominick P. Guida et al (2023), Methods for Tomographic Segmentation in Pseudo-Cylindrical Coordinates for Bobbin-Type Batteries, ACS Meas. Sci. Au, doi: 10.1021/acsmeasuresciau.3c00015 

Sharut Gupta et al (2023), Structuring Representation Geometry with​ Rotationally Equivariant Contrastive Learning, arXiv: 2306.13924 [cs.LG] 

Stella Huynh et al (2023), Whole-genome Analyses Reveal Past Population Fluctuations and Low Genetic Diversities of the North Pacific Albatrosses, Molecular Biology and Evolution, doi: 10.1093/molbev/msad155 

Shibal Ibrahim et al (2023), COMET: Learning Cardinality Constrained Mixture of Experts with Trees and Local Search, arXiv: 2306.02824 [cs.LG] 

Tousif Islam and Gaurav Khanna (2023), Interplay between numerical relativity and perturbation theory: finite size effects, arxiv: 2306.08767 [gr-qc] 

Tousif Islam and Gaurav Khanna (2023), On the approximate relation between black-hole perturbation theory and numerical relativity, arXiv: 2307.03155 [gr-qc] 

Tejas Jayashankar et al (2023), Score-based Source Separation with Applications to Digital Communication Signals, arXiv: 2306.14411 [cs.LG] 

Marius Kadek et al (2023), Band structures and Z2 invariants of two-dimensional transition metal dichalcogenide monolayers from fully relativistic Dirac-Kohn-Sham theory using Gaussian-type orbitals, Phys. Rev. Materials, doi: 10.1103/PhysRevMaterials.7.064001 

William Lehman, Michael J. Rynkiewicz (2023), Troponin-I–induced tropomyosin pivoting defines thin-filament function in relaxed and active muscle, J Gen Physiol, doi: 10.1085/jgp.202313387 

Yi-Lun Liao et al (2023), EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations, arXiv: 2306.12059 [cs.LG]

David M. Long et al (2023), Beyond Fermi’s golden rule with the Jacobi method, arXiv: 2306.16457 [quant-ph]

Nguyen, L.H., Okin, D., Drew, D.A. et al (2023), Metagenomic assessment of gut microbial communities and risk of severe COVID-19, Genome Med, doi: 10.1186/s13073-023-01202-6

Cameron J. Owen et al (2023), Unraveling the Catalytic Effect of Hydrogen Adsorption on Pt Nanoparticle Shape-Change, arXiv: 2306.00901 [cond-mat.mtrl-sci] 

George V. Papamokos, Efthimios Kaxiras (2023), How to evict HP1 from H3: Using a complex salt bridge, Biophysical Chemistry, doi: 10.1016/j.bpc.2023.107062 

Apakorn Phasuk and Ricardo B. Metz (2023), Al+ Activates Acetone to Form Pinacolate, J. Phys. Chem. Lett., doi: 10.1021/acs.jpclett.3c01360 

Michael A. Rawlins and Ambarish V. Karmalkar (2023), Regime Shifts in Arctic Terrestrial Hydrology Manifested From Impacts of Climate Warming, The Cryosphere Discuss, doi: 10.5194/tc-2023-84

Nicolas Romeo, Jonasz Słomka, Jörn Dunkel and Keaton J. Burns (2023), Vortex line entanglement in active Beltrami flows, arXiv: 2306.01062 [physics.flu-dyn] 

Tikale Sahil (2023), Market Driven Elastic Secure Infrastructure, Boston University ProQuest Dissertations Publishing

Vadim E. Semenov et al (2023), Formation of Galactic Disks I: Why did the Milky Way’s Disk Form Unusually Early? arXiv: 2306.09398 [astro-ph.GA] 

Vadim A. Semenov et al (2023), Formation of Galactic Disks II: the Physical Drivers of Disk Spin-up, arXiv: 2306.13125 [astro-ph.GA] 

Shah, Darshil Manish (2023), 3D Printing of and Light Scattering in Highly Filled Systems for Mechanical Metamaterials, University of Massachusetts Lowell ProQuest Dissertations Publishing

P. Shukla, V. F. Pavlidis, E. Salman and A. K. Coskun (2023), “TREAD-M3D: Temperature-Aware DNN Accelerators for Monolithic 3D Mobile Systems,” in IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, doi: 10.1109/TCAD.2023.3285039

Lin Su et al (2023), Dipolar quantum solids emerging in a Hubbard quantum simulator, arXiv: 2306.00888 [cond-mat.quant-gas] 

Haoyuan Sun et al (2023), A Unified Approach to Controlling Implicit Regularization via Mirror Descent, arXiv: 2306.13853 [cs.LG] 

Kelsey N. Thompson et al (2023), Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes, Science Translational Medicine, doi: 10.1126/scitranslmed.abn4722 

Yu Tian et al (2023), Curvature-based Clustering on Graphs, arXiv: 2307.11055 [cs.SI] 

Maria Tikhanovskaya, Ali Lavasani, Matthew P. A. Fisher, and Sagar Vijay (2023), Universality of the cross entropy in Z2 symmetric monitored quantum circuits, arXiv: 2306.00058 [quat-ph] 

Sofia L. Vega and Rachel C. Nethery (2023), Spatio-temporal quasi-experimental methods for rare disease outcomes: The impact of reformulated gasoline on childhood hematologic cancer, arXiv: 2307.09546 [stat.AP] 

Mark S. Veillette and Virginia Goodwin (2023), Mission Optimized Weather Nowcasting for Flight Planning, AIAA 2023-4095 Session: Atmospheric and Space Environments Virtual Session, doi: 10.2514/6.2023-4095

Hao Wang and Lei Tian (2023), Local Conditional Neural Fields for Versatile and Generalizable Large-Scale Reconstructions in Computational Imaging, arXiv: 2307.06207 [eess.IV] 

Trent Weiss et al (2023), Characterizing the Impact of Oligomerization on Redox Flow Cell Performance, Batteries & Supercaps, doi: 10.1002/batt.202300034 

Emily Williams et al (2023), Near-Field Wall-Modeled Large-Eddy Simulation of the NASA X-59 Low-Boom Flight Demonstrator, arXiv: 2307.02725 [physics.flu-dyn] 

Kaiyang Yin et al (2023), Hierarchical structure formation by crystal growth-front instabilities during ice templating, PNAS, doi: 10.1073/pnas.2210242120 

Krissia Zawadzki et al (2023), Work statistics and Entanglement across the fermionic superfluid-insulator transition, arXiv: 2307.13059 [quant-ph] 

Cheng Zeng et al (2023), Machine Learning Accelerated Discovery of Corrosion-resistant High-entropy Alloys, arXiv: 2307.06384 [cond-mat.mtrl] 

Muni Zhou, Zhuo Liu, and Nuno F. Loureiro (2023), Electron heating in kinetic-Alfvén-wave turbulence, PNAS, doi: 10.1073/pnas.2220927120 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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