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June & July 2024 Publications

August 9, 2024

Solid Electrolyte Interphase Formation in Lithium Batteries? Non-Axisymmetric Gravitational “Hair”? Synthetic Audio Doppelgängers? A bumper summer selection of recent publications featuring research using the MGHPCC.

Ahangaran, M. et al (2024), DREAMER: a computational framework to evaluate readiness of datasets for machine learning, BMC Med Inform Decis Mak, doi: 10.1186/s12911-024-02544-w

Attie, L. et al (2024), Surfactant–Polymer Complexation and Competition on Drug Nanocrystal Surfaces Control Crystallinity, ACS Appl. Mater. Interfaces, doi: 10.1021/acsami.4c06815

Bishoyi, D. et al (2024), Non-Axisymmetric Gravitational “Hair” for Extremal Black Holes, arXiv: 2407.06926 [gr-qc]

Blais, C.J. et al (2024), Uncertainty Quantification of Linear Scaling, Machine Learning, and DFT Derived Thermodynamics for the Catalytic Partial Oxidation of Methane on Rhodium, via ChemRxiv, doi: 10.26434/chemrxiv-2024-rhn8l

Burte, A.S. et al (2024), Thermodynamics and electronic structure of edges in monolayer MoSi2N4, Journal of Applied Physics, doi: 10.1063/5.0218366

Byun, Chansup et al (2024), LLload: Simplifying Real-Time Job Monitoring for HPC Users, arXiv: 2407.01481 [cs.DC]

Carder, H.M. et al (2024), The sugar cube: Network control and emergence in stereoediting reactions, Science, doi: DOI: 10.1126/science.adp2447

Chandra, V. et al (2024), All-Sky Kinematics of the Distant Halo: The Reflex Response to the LMC, arXiv: 2406.01676 [astro-ph.GA]

Cherep, M. and N. Singh (2024), Contrastive Learning from Synthetic Audio Doppelgängers, arXiv: 2406.05923 [cs.SD]

Dai, D.D. and L.Fu (2024), Electron bubbles in highly excited states of the lowest Landau level, arXiv: 2407.09204 [cond-mat.mes-hall]

Deng, J. and Q. Cui (2024), Electronic Polarization Leads to a Drier Dewetted State for Hydrophobic Gating in the Big Potassium Channel, The Journal of Physical Chemistry Letters, doi: 10.1021/acs.jpclett.4c01359

Elrefaie, M. et al (2024), DrivAerNet++: A Large-Scale Multimodal Car Dataset with Computational Fluid Dynamics Simulations and Deep Learning Benchmarks, arXiv: 2606.09624 [cs.LG]

Fang, L et al (2024), Revealing Structural Evolution of Single Atom Catalysts during Electrochemical CO2 Reduction by in Situ X-ray Absorption Spectroscopy, ACS Materials Letters, doi: 10.1021/acsmaterialslett.4c00554

Gangopadhyay, R.J. et al (2024), module_check – Quality Assurance Tool for Software Installation, PEARC ’24, July 21–25, 2024, Providence, RI, USA, doi: 0.1145/3626203.3670554

Gao, Anyuan et al (2024), An antiferromagnetic diode effect in even-layered MnBi2Te4, arXiv: 2406.16771 [cond-mat.strl-el]

Greenman, K.P. (2024), Optical Property Prediction and Molecular Discovery through Multi-Fidelity Deep Learning and Computational Chemistry, MIT Doctoral Dissertation

Hahn, G. et al (2024), Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data, Briefings in Bioinformatics, doi: 10.1093/bib/bbae267

Hartquist, C.M. et al (2024), Reversible two-way tuning of thermal conductivity in an end-linked star-shaped thermoset, Nature Communications, doi: 10.1038/s41467-024-49354-2

Islam, T. et al (2024), Phenomenology and origin of late-time tails in eccentric binary black hole mergers, arXiv: 2407.04682 [gr-qc]

Islam T. et al (2024), Gravitational waves from black hole emission, arXiv: 2407.16989 [gr-qc]

Islam, T. et al (2024), Phenomenology and origin of late-time tails in eccentric binary black hole mergers, 2407.04682 [gr-qc]

Johnson, M.A. et al (2024), Automatic Generation of Chemical Mechanisms for Electrochemical Systems: Solid Electrolyte Interphase Formation in Lithium Batteries, via ChemRxiv, doi: 10.26434/chemrxiv-2024-plzrv

Johnson, Michael D. et al (2024), The Black Hole Explorer: Motivation and Vision, arXiv: 2406.12917 [astro-ph.IM]

Joung, J.F. et al (2024), Reproducing Reaction Mechanisms with Machine Learning Models Trained on a Large-Scale Mechanistic Dataset, Angewandte Chemie, doi: 10.1002/anie.202411296

Kim, S. and Brian D. Farrell (2024), Target enrichment museomics of the Asian long-horned beetle and its relatives (Cerambycidae: Anoplophora) reveals two independent origins of life in the cold, Systematic Entomology, doi: 10.1111/syen.12647

Lavezzi, G. et al (2024), Orbital Tolerance and Intrinsic Orbital Capacity for Electric Propulsion Constellations, Aerospace Research Central, doi: 10.2514/1.A35875

Li, C. et al (2024), Discovering neural policies to drive behaviour by integrating deep reinforcement learning agents with biological neural networks, Nat Mach Intell, doi: 10.1038/s42256-024-00854-2

Li, M. et al (2024), Design of a water-soluble transmembrane receptor kinase with intact molecular function by QTY code, Nat Commun, doi: 10.1038/s41467-024-48513-9

Li, Y., Li, Z., Misra, R.P. et al (2024), Molecular transport enhancement in pure metallic carbon nanotube porins, Nature Materials, doi: 10.1038/s41563-024-01925-w

Lifson, M et al (2024), Method for Generating Closely Packed Orbital Shells and Orbital Capacity Implications, Journal of Guidance, Control and Dynamics, doi: 10.2514/1.G008301

Massoudi, Soheyl, Cyril Picard, Jürg Schiffmann (2024), An Integrated Approach to Designing Robust Gas-Bearing Supported Turbocompressors Through Surrogate Modeling and Constrained All-At-Once Multi-Objective Optimization, Journal of Mechanical Design, doi: 10.1115/1.4065823

McDonough, Bryanna and Reuben Dsouza (2024), The Distribution of Satellites in the TNG100 Simulation based on Time Spent in Halo, Res. Notes AAS, doi: 10.3847/2515-5172/ad50d7

Mei, Z., Wang, F., Bhosle, A. et al (2024), Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes, Nature Medicine, doi: 10.1038/s41591-024-03067-7

Millimaci, A.M. et al (2024), Regioselective Photoredox Catalyzed Cycloadditions of Acyclic Carbonyl Ylides, via ChemRxiv, doi: 10.26434/chemrxiv-2024-k035t

Myers, L.C. et al (2024), Opioid Administration Practice Patterns in Patients With Acute Respiratory Failure Who Undergo Invasive Mechanical Ventilation, Critical Care Explorations, doi: 10.1097/CCE.0000000000001123

Owens, James, Tim Schittekatte and Emre Gençer (2024), Commercial electric vehicle fleets in U.S. ancillary services markets: A stochastic analysis to inform utility rate design, Utilities Policy, doi: 10.1016/j.jup.2024.101790

Pieper, B.A. (2024), Reinforcement Learning for Cybersecurity Risk Assessment of Advanced Air Mobility Systems, MIT Doctoral Dissertation

Rijal, Krishna and Pankaj Mehta (2024), A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits, arXiv: 2407.04865 [physics. bio-ph]

Rink, K. et al (2024), Gravitational wave surrogate model for spinning, intermediate mass ratio binaries based on perturbation theory and numerical relativity, arXiv: 2407.18319 [gr-qc]

Schroedi, P. et al (2024), Carbonate chimneys at the highly productive point Dume methane seep: Fine-scale mineralogical, geochemical, and microbiological heterogeneity reflects dynamic and long-lived methane-metabolizing habitats, Geobiology, doi: 10.1111/gbi.12608

Speagle, J.S. et al (2024), Mapping the Milky Way in 5D with 170 Million Stars, The Astrophysical Journal, doi: 10.3847/1538-4357/ad2b62m

Sprague, M.X. et al (2024), Observation of paramagnetic spin-degeneracy lifting in EuZn2⁢Sb2, Physical review B, doi: 10.1103/PhysRevB.110.045130

Sun, H., et al (2024), Stratospheric transport and tropospheric sink of solar geoengineering aerosol: a Lagrangian analysis, npj Clim Atmos Sci, doi: 10.1038/s41612-024-00664-8

Tikhanovskaya, Maria et al (2024), Universality of the cross-entropy in ℤ2 symmetric monitored quantum circuits, Physical Review B, doi: 10.1103/PhysRevB.109.224313

Wan, Mingyu (2024), Electrocatalysis Modulated by Organic-Inorganic Interfaces, UMass Lowell Doctoral Dissertation

Wu, L. (2024), Regulation of Recombinant Synaptic Fusion Pores, University of Wisconsin Doctoral Dissertation

Xiong, Z. and R.m. Freund (2024), The Role of Level-Set Geometry on the Performance of PDHG for Conic Linear Optimization, arXiv: 2406.01942 [math.OC]

Yang, H. et al (2024), Multicell-Fold: geometric learning in folding multicellular life, arXiv: 2407.07055 [cond-mat.soft]

Yang, S. et al (2024), Learning Collective Variables with Synthetic Data Augmentation through Physics-Inspired Geodesic Interpolation, Journal of Chemical Theory and Computation, doi: 10.1021/acs.jctc.4c00435

Yue, H et al (2024), Graph-learning-assisted state estimation using sparse heterogeneous measurements, Electric Power Systems Research, doi: 10.1016/j.epsr.2024.110644

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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