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June & July 2024 Publications

August 9, 2024

Solid Electrolyte Interphase Formation in Lithium Batteries? Non-Axisymmetric Gravitational “Hair”? Synthetic Audio Doppelgängers? A bumper summer selection of recent publications featuring research using the MGHPCC.

Ahangaran, M. et al (2024), DREAMER: a computational framework to evaluate readiness of datasets for machine learning, BMC Med Inform Decis Mak, doi: 10.1186/s12911-024-02544-w

Attie, L. et al (2024), Surfactant–Polymer Complexation and Competition on Drug Nanocrystal Surfaces Control Crystallinity, ACS Appl. Mater. Interfaces, doi: 10.1021/acsami.4c06815

Bishoyi, D. et al (2024), Non-Axisymmetric Gravitational “Hair” for Extremal Black Holes, arXiv: 2407.06926 [gr-qc]

Blais, C.J. et al (2024), Uncertainty Quantification of Linear Scaling, Machine Learning, and DFT Derived Thermodynamics for the Catalytic Partial Oxidation of Methane on Rhodium, via ChemRxiv, doi: 10.26434/chemrxiv-2024-rhn8l

Burte, A.S. et al (2024), Thermodynamics and electronic structure of edges in monolayer MoSi2N4, Journal of Applied Physics, doi: 10.1063/5.0218366

Byun, Chansup et al (2024), LLload: Simplifying Real-Time Job Monitoring for HPC Users, arXiv: 2407.01481 [cs.DC]

Carder, H.M. et al (2024), The sugar cube: Network control and emergence in stereoediting reactions, Science, doi: DOI: 10.1126/science.adp2447

Chandra, V. et al (2024), All-Sky Kinematics of the Distant Halo: The Reflex Response to the LMC, arXiv: 2406.01676 [astro-ph.GA]

Cherep, M. and N. Singh (2024), Contrastive Learning from Synthetic Audio Doppelgängers, arXiv: 2406.05923 [cs.SD]

Dai, D.D. and L.Fu (2024), Electron bubbles in highly excited states of the lowest Landau level, arXiv: 2407.09204 [cond-mat.mes-hall]

Deng, J. and Q. Cui (2024), Electronic Polarization Leads to a Drier Dewetted State for Hydrophobic Gating in the Big Potassium Channel, The Journal of Physical Chemistry Letters, doi: 10.1021/acs.jpclett.4c01359

Elrefaie, M. et al (2024), DrivAerNet++: A Large-Scale Multimodal Car Dataset with Computational Fluid Dynamics Simulations and Deep Learning Benchmarks, arXiv: 2606.09624 [cs.LG]

Fang, L et al (2024), Revealing Structural Evolution of Single Atom Catalysts during Electrochemical CO2 Reduction by in Situ X-ray Absorption Spectroscopy, ACS Materials Letters, doi: 10.1021/acsmaterialslett.4c00554

Gangopadhyay, R.J. et al (2024), module_check – Quality Assurance Tool for Software Installation, PEARC ’24, July 21–25, 2024, Providence, RI, USA, doi: 0.1145/3626203.3670554

Gao, Anyuan et al (2024), An antiferromagnetic diode effect in even-layered MnBi2Te4, arXiv: 2406.16771 [cond-mat.strl-el]

Greenman, K.P. (2024), Optical Property Prediction and Molecular Discovery through Multi-Fidelity Deep Learning and Computational Chemistry, MIT Doctoral Dissertation

Hahn, G. et al (2024), Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data, Briefings in Bioinformatics, doi: 10.1093/bib/bbae267

Hartquist, C.M. et al (2024), Reversible two-way tuning of thermal conductivity in an end-linked star-shaped thermoset, Nature Communications, doi: 10.1038/s41467-024-49354-2

Islam, T. et al (2024), Phenomenology and origin of late-time tails in eccentric binary black hole mergers, arXiv: 2407.04682 [gr-qc]

Islam T. et al (2024), Gravitational waves from black hole emission, arXiv: 2407.16989 [gr-qc]

Islam, T. et al (2024), Phenomenology and origin of late-time tails in eccentric binary black hole mergers, 2407.04682 [gr-qc]

Johnson, M.A. et al (2024), Automatic Generation of Chemical Mechanisms for Electrochemical Systems: Solid Electrolyte Interphase Formation in Lithium Batteries, via ChemRxiv, doi: 10.26434/chemrxiv-2024-plzrv

Johnson, Michael D. et al (2024), The Black Hole Explorer: Motivation and Vision, arXiv: 2406.12917 [astro-ph.IM]

Joung, J.F. et al (2024), Reproducing Reaction Mechanisms with Machine Learning Models Trained on a Large-Scale Mechanistic Dataset, Angewandte Chemie, doi: 10.1002/anie.202411296

Kim, S. and Brian D. Farrell (2024), Target enrichment museomics of the Asian long-horned beetle and its relatives (Cerambycidae: Anoplophora) reveals two independent origins of life in the cold, Systematic Entomology, doi: 10.1111/syen.12647

Lavezzi, G. et al (2024), Orbital Tolerance and Intrinsic Orbital Capacity for Electric Propulsion Constellations, Aerospace Research Central, doi: 10.2514/1.A35875

Li, C. et al (2024), Discovering neural policies to drive behaviour by integrating deep reinforcement learning agents with biological neural networks, Nat Mach Intell, doi: 10.1038/s42256-024-00854-2

Li, M. et al (2024), Design of a water-soluble transmembrane receptor kinase with intact molecular function by QTY code, Nat Commun, doi: 10.1038/s41467-024-48513-9

Li, Y., Li, Z., Misra, R.P. et al (2024), Molecular transport enhancement in pure metallic carbon nanotube porins, Nature Materials, doi: 10.1038/s41563-024-01925-w

Lifson, M et al (2024), Method for Generating Closely Packed Orbital Shells and Orbital Capacity Implications, Journal of Guidance, Control and Dynamics, doi: 10.2514/1.G008301

Massoudi, Soheyl, Cyril Picard, Jürg Schiffmann (2024), An Integrated Approach to Designing Robust Gas-Bearing Supported Turbocompressors Through Surrogate Modeling and Constrained All-At-Once Multi-Objective Optimization, Journal of Mechanical Design, doi: 10.1115/1.4065823

McDonough, Bryanna and Reuben Dsouza (2024), The Distribution of Satellites in the TNG100 Simulation based on Time Spent in Halo, Res. Notes AAS, doi: 10.3847/2515-5172/ad50d7

Mei, Z., Wang, F., Bhosle, A. et al (2024), Strain-specific gut microbial signatures in type 2 diabetes identified in a cross-cohort analysis of 8,117 metagenomes, Nature Medicine, doi: 10.1038/s41591-024-03067-7

Millimaci, A.M. et al (2024), Regioselective Photoredox Catalyzed Cycloadditions of Acyclic Carbonyl Ylides, via ChemRxiv, doi: 10.26434/chemrxiv-2024-k035t

Myers, L.C. et al (2024), Opioid Administration Practice Patterns in Patients With Acute Respiratory Failure Who Undergo Invasive Mechanical Ventilation, Critical Care Explorations, doi: 10.1097/CCE.0000000000001123

Owens, James, Tim Schittekatte and Emre Gençer (2024), Commercial electric vehicle fleets in U.S. ancillary services markets: A stochastic analysis to inform utility rate design, Utilities Policy, doi: 10.1016/j.jup.2024.101790

Pieper, B.A. (2024), Reinforcement Learning for Cybersecurity Risk Assessment of Advanced Air Mobility Systems, MIT Doctoral Dissertation

Rijal, Krishna and Pankaj Mehta (2024), A differentiable Gillespie algorithm for simulating chemical kinetics, parameter estimation, and designing synthetic biological circuits, arXiv: 2407.04865 [physics. bio-ph]

Rink, K. et al (2024), Gravitational wave surrogate model for spinning, intermediate mass ratio binaries based on perturbation theory and numerical relativity, arXiv: 2407.18319 [gr-qc]

Schroedi, P. et al (2024), Carbonate chimneys at the highly productive point Dume methane seep: Fine-scale mineralogical, geochemical, and microbiological heterogeneity reflects dynamic and long-lived methane-metabolizing habitats, Geobiology, doi: 10.1111/gbi.12608

Speagle, J.S. et al (2024), Mapping the Milky Way in 5D with 170 Million Stars, The Astrophysical Journal, doi: 10.3847/1538-4357/ad2b62m

Sprague, M.X. et al (2024), Observation of paramagnetic spin-degeneracy lifting in EuZn2⁢Sb2, Physical review B, doi: 10.1103/PhysRevB.110.045130

Sun, H., et al (2024), Stratospheric transport and tropospheric sink of solar geoengineering aerosol: a Lagrangian analysis, npj Clim Atmos Sci, doi: 10.1038/s41612-024-00664-8

Tikhanovskaya, Maria et al (2024), Universality of the cross-entropy in ℤ2 symmetric monitored quantum circuits, Physical Review B, doi: 10.1103/PhysRevB.109.224313

Wan, Mingyu (2024), Electrocatalysis Modulated by Organic-Inorganic Interfaces, UMass Lowell Doctoral Dissertation

Wu, L. (2024), Regulation of Recombinant Synaptic Fusion Pores, University of Wisconsin Doctoral Dissertation

Xiong, Z. and R.m. Freund (2024), The Role of Level-Set Geometry on the Performance of PDHG for Conic Linear Optimization, arXiv: 2406.01942 [math.OC]

Yang, H. et al (2024), Multicell-Fold: geometric learning in folding multicellular life, arXiv: 2407.07055 [cond-mat.soft]

Yang, S. et al (2024), Learning Collective Variables with Synthetic Data Augmentation through Physics-Inspired Geodesic Interpolation, Journal of Chemical Theory and Computation, doi: 10.1021/acs.jctc.4c00435

Yue, H et al (2024), Graph-learning-assisted state estimation using sparse heterogeneous measurements, Electric Power Systems Research, doi: 10.1016/j.epsr.2024.110644

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

Foldit
Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
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