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June Publications

July 6, 2022

Characterizing Simulated Traffic Management? Observability of Galaxy Merger Signatures? Humanitarian Assistance and Disaster Relief Modeling? This month’s selection of publications featuring research using the MGHPCC.

Biswas, Niloy (2022), Contributions to Scalable Bayesian Computation, https://dash.harvard.edu/handle/1/37372040

Cone, Cooper E (2022), Evaluating Alternative Solutions for Aircraft Collision Avoidance, Tufts University Masters Thesis, https://www.proquest.com/openview/bb37c6262ed6a1f503cf250cf73216b2/1?pq-origsite=gscholar&cbl=18750&diss=y

Aurelien Dersy et al (2022), Simplifying Polylogarithms with Machine Learning, arXiv: 2206.04115 [cs.LG] 

Sen Gao et al (2022), Catalyst-free synthesis of sub-5 nm silicon nanowire arrays with massive lattice contraction and wide bandgap, Nature Communications, doi: 10.1038/s41467-022-31174-x

James C. Jones, Zachary Ellenbogen and Yan Glina (2022), Characterizing Simulated Traffic Management Initiatives with Unsupervised Learning, AIAA AVIATION 2022 Forum June 27-July 1, 2022 Chicago, IL & Virtual, doi: 10.2514/6.2022-4025

Boris Kozinsky et al (2022), Uncertainty-aware molecular dynamics from Bayesian active learning: Phase Transformations and Thermal Transport in SiC, Research Square, doi: 10.21203/rs.3.rs-1606203/v1

Peggy Lai et al (2022), Metagenomic assessment of gut microbial communities and risk of severe COVID-19, Research Square, doi: 10.21203/rs.3.rs-1717624/v1

D, Kirk Lewis et al (2022), Electronic Structure of de Novo Peptide ACC-Hex from First Principles, J. Phys. Chem. B, doi: 10.1021/acs.jpcb.2c02346

Mazeau, Emily J. (2022), Ongoing Developments in Automatic Generation of Microkinetic Models for Heterogeneous Catalysis Using RMG, Doctoral Dissertation Northeastern University, https://www.proquest.com/openview/f569ecdcf45815d2f759e14206eb2517/1?pq-origsite=gscholar&cbl=18750&diss=y

Rahul Mazumder et al (2022), Quant-BnB: A Scalable Branch-and-Bound Method for Optimal Decision Trees with Continuous Features, arXiv: 2206.11844 [cs.LG]

Rebecca McElroy et al (2022), The observability of galaxy merger signatures in nearby gas-rich spirals, arXiv:2206.07545 [astro-ph.GA] 

Schuldt, Dieter Wolfgang (2022), Application of Agent-Based Modeling to Problems in Humanitarian Assistance and Disaster Relief, Doctoral Dissertation Tufts University, https://www.proquest.com/openview/3e20bbf9097f4fbaae508a14e3fd1834/1?pq-origsite=gscholar&cbl=18750&diss=y

Daniel Schwalbe-Koda et al (2022), Repurposing Templates for Zeolite Synthesis from Simulations and Data Mining, Chem. Mater., doi: 10.1021/acs.chemmater.2c00064

Kevin A. Spiekermann, Lagnajit Pattanaik, and William H. Green (2022), Fast Predictions of Reaction Barrier Heights: Toward Coupled-Cluster Accuracy, J. Phys. Chem. A, doi: 10.1021/acs.jpca.2c02614

Mingyu Wan et al (2022), Deep Learning-Assisted Investigation of Electric Field–Dipole Effects on Catalytic Ammonia Synthesis, JACS Au, doi: jacsau.2c00003

Emily Williams and Adrian Lozano-Duran (2022), Information-Theoretic Approach for Subgrid-Scale Modeling for High-Speed Compressible Wall Turbulence, AIAA AVIATION 2022 Forum June 27-July 1, 2022 Chicago, IL & Virtual, doi: 10.2514/6.2022-3326

Yuchen Yuan, Jiahua Deng, and Qiang Cui (2022), Molecular Dynamics Simulations Establish the Molecular Basis for the Broad Allostery Hotspot Distributions in the Tetracycline Repressor, J. Am. Chem. Soc., doi: 10.1021/jacs.2c03275

Ali R. Zomorrodi et al (2022), Computational design and engineering of an Escherichia coli strain producing the nonstandard amino acid para-aminophenylalanine, iScience, doi: 10.1016/j.isci.2022.104562

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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