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March Publications

April 2, 2020

Below is a selection of papers that appeared in March 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT's Engaging Cluster all of which are housed at the MGHPCC.

Caitlin M. Baker, Sarah L. Boyer, Gonzalo Giribet (2020), A well‐resolved transcriptomic phylogeny of the mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) reveals signatures of Gondwanan vicariance, Journal of Biogeography, doi: 10.1111/jbi.13828
Stephen Carr, Chenyuan Li, Ziyan Zhu, Efthimios Kaxiras, Subir Sachdev, Alexander Jura Kruchkov (2020), Ultraheavy and ultrarelativistic Dirac quasiparticles in sandwiched graphenes, Nano Letters, doi: 10.1021/acs.nanolett.9b04979
Cox, Jordan; Lopez, Steven (2020), Multiconfigurational Dynamics Explain Photochemical Reactivity and Torquoselectivity Towards Fluorinated Polyacetylenes, ChemRxiv. Preprint., doi: 10.26434/chemrxiv.11980827
M. Francisquez, T. N. Bernard, B. Zhu, A. Hakim, B. N. Rogers, and G. W. Hammett (2020), Fluid & Gyrokinetic turbulence in open field-line, helical plasmas, arXiv: 2002.11136 [physics.plasm-ph]
Alexander V. Gramolin, Deniz Aybas, Dorian Johnson, Janos Adam, and Alexander O. Sushkov (2020), Search for axion-like dark matter with ferromagnets, arXiv: 2003.03348 [hep-ex]
C. Rose Kennedy, Bo Young Choi, Mary‐Grace R. Reeves, Eric N. Jacobsen (2020), Enantioselective Catalysis of an Anionic Oxy‐Cope Rearrangement Enabled by Synergistic Ion Binding, Israel Journal of Chemistry, doi: 10.1002/ijch.201900168
Daniel T. Larson, Wei Chen, Steven B. Torrisi, Jennifer Coulter, Shiang Fang, and Efthimios Kaxiras (2020), Effects of Structural Distortions on the Electronic Structure of T-type Transition Metal Dichalcogenides, arXiv: 2003.10473 [cond-mat.mes-hall]
Qiyang Lu , Samuel Huberman , Hantao Zhang, Qichen Song , Jiayue Wang , Gulin Vardar, Adrian Hunt, Iradwikanari Waluyo, Gang Chen  and Bilge Yildiz  (2020), Bi-directional tuning of thermal transport in SrCoOx with electrochemically induced phase transitions, Nature Materials, doi: 10.1038/s41563-020-0612-0
Robert Marsland III, Cui Wenping, Mehta Pankaj (2020), A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns, Scientific Reports, doi: 10.1038/s41598-020-60130-2
Morovatiyan, Mohammadrasool (2020), Fundamental Investigation of Symmetrically Expanding Premixed Flames of Gaseous Fuels and Noble Gas Working Fluids in a Constant Volume Combustion Chamber, University of Massachusetts Lowell, ProQuest Dissertations Publishing
Dmitry Prokopenko, Julian Hecker, Rory Kirchner, Brad A. Chapman, Oliver Hoffman, Kristina Mullin, Winston Hide, Lars Bertram, Nan Laird, Dawn L. DeMeo, Christoph Lange & Rudolph E. Tanzi (2020), Identification of Novel Alzheimer’s Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data, Scientific Reports, doi: 10.1038/s41598-020-61883-6
Jingjie Yeo, Yimin Qiu, Gang Seob Jung, Yong-Wei Zhang, Markus J. Buehler, David L. Kaplan (2020), Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments, Biomaterials, doi: 10.1016/j.biomaterials.2020.119857
Hailong Wang, Erik T. Nilsen and Moneesh Upmanyu (2020), Mechanical basis for thermonastic movements of cold-hardy Rhododendron leaves, Journal f the Royal Society Interface, doi: 10.1098/rsif.2019.0751
Huize Wang and Robin Wordsworth (2020), Extremely Long Convergence Times in a 3D GCM Simulation of the Sub-Neptune Gliese 1214b, The Astrophysical Journal, doi: 10.3847/1538-4357/ab6dcc
Michael E. Xie, Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou, Liam Paninski, Adam E. Cohen (2020), High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo, bioRxiv, doi: 10.1101/2020.01.26.920256
Yujia Xue, Ian G. Davison, David A. Boas, Lei Tian (2020), Single-Shot 3D Widefield Fluorescence Imaging with a Computational Miniature Mesoscope, arXiv:2003.11994
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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