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March Publications

April 4, 2022

What’s new from BICEP/Keck? Staphylococcal Nuclease Mutants? Fermi arcs and Weyl nodes? This month’s selection of publications featuring research using the MGHPCC.

BICEP/ Keck Collaboration (2022), BICEP/Keck XV: The BICEP3 Cosmic Microwave Background Polarimeter and the First Three-year Data Set, The Astrophysical Journal, doi: 10.3847/1538-4357/ac4886

Darren Demapan, Jörg Kussmann, Christian Ochsenfeld, and Qiang Cui (2022), Factors That Determine the Variation of Equilibrium and Kinetic Properties of QM/MM Enzyme Simulations: QM Region, Conformation, and Boundary Condition, J. Chem. Theory Comput., doi: 10.1021/acs.jctc.1c00714

Jiahua Deng and Qiang Cui (2022), Electronic Polarization Is Essential for the Stabilization and Dynamics of Buried Ion Pairs in Staphylococcal Nuclease Mutants, J. Am. Chem. Soc., doi: 10.1021/jacs.2c00312

Marc Healy, John Rogan, Lara A. Roman, Sabine Nix, Deborah G. Martin & Nicholas Geron (2022), Historical Urban Tree Canopy Cover Change in Two Post-Industrial Cities, Environmental Management, doi: 10.1007/s00267-022-01614-x

Yinqiu Ji et al (2022), Measuring protected-area effectiveness using vertebrate distributions from leech iDNA, Nature Communications, doi: 10.1038/s41467-022-28778-8

Connor Johnson et al (2022), Highly unstable heterogeneous representations in VIP interneurons of the anterior cingulate cortex, Nature Psychiatry, doi: s41380-022-01485-y

Aobo Li et al (2022), KamNet: An Integrated Spatiotemporal Deep Neural Network for Rare Event Search
in KamLAND–Zen, arXiv: 2203.10870 [physics.ins-det]

Smarak Maity et al (2022), Mechanical Control of a Single Nuclear Spin, Physics Review X, doi: 10.1103/PhysRevX.12.011056

Donggi Paik et al (2022), Human gut bacteria produce ΤΗ17-modulating bile acid metabolites, Nature, doi: 10.1038/s41586-022-04480-z

Junwoo Park et al (2022), Controlled Hysteresis of Conductance in Molecular Tunneling Junctions, ACS Nano, doi: 10.1021/acsnano.1c10155

Jason W. Rocks and Pankaj Mehta (2022), Bias-variance decomposition of overparameterized regression with random linear features, arXiv: 2203.05443 [stat.ML]

Anup Pradhan Sakhya et al (2022), Observation of Fermi arcs and Weyl nodes in a non-centrosymmetric magnetic Weyl semimetal, arXiv: 2203.05440 [cond-mat.mes-hall]

Y. Wu, T. Wu, and S.-T. Yau (2022), Surface Eigenvalues with Lattice-Based Approximation, arXiv: 2203.03603 [math.NA]

Yu Xie et al (2022), Uncertainty-aware molecular dynamics from Bayesian active learning: Phase Transformations and Thermal Transport in SiC, arXiv: 2203.03824 [physics.comp-ph]

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

Links

MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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Outreach & Education Projects

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