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May 2023 Publications

June 6, 2023

Curvature induced unjamming? Generative data augmentation? Machine-learning accelerated molecular dynamics? This month’s selection of publications featuring research using the MGHPCC.

Chhetri, M., Wan, M., Jin, Z. et al. (2023), Dual-site catalysts featuring platinum-group-metal atoms on copper shapes boost hydrocarbon formations in electrocatalytic CO2 reduction, Nat. Commun., doi: 10.1038/s41467-023-38777-y 

De Marzio, Margherita et al (2023), Epithelial layer fluidization by curvature-induced unjamming, arXiv: 2305.12667 [physics.bio-ph]

Deng, Jiahua and Qiang Cui (2023), Second-Shell Residues Contribute to Catalysis by Predominately Preorganizing the Apo State in PafA, J. Am. Chem. Soc., doi: 10.1021/jacs.3c02423 

Du, Xiaochen et al (2023), Machine-learning-accelerated simulations enable heuristic-free surface reconstruction, arXiv: 2305.07251 [cond-mat.mtrl-sci]  

Ferri, P., Li, C., Schwalbe-Koda, D. et al. (2023), Approaching enzymatic catalysis with zeolites or how to select one reaction mechanism competing with others, Nat. Commun.,  doi: 10.1038/s41467-023-38544-z 

Guo, Zhen et al (2023), Dr. LLaMA: Improving Small Language Models on PubMedQA via Generative Data Augmentation, arXiv: 2305.07804.pdf [cs.CL] 

Kumar, Aman and Noah Van Dam (2023), Study of Injector Geometry and Parcel Injection Location on Spray Simulation of the Engine Combustion Network Spray G Injector, J. Eng. Gas Turbines Power, doi: 10.1115/1.4062414 

Lozano-Durán, Adrián  and H. Jane Bae (2023), Machine learning building-block-flow wall model for large-eddy simulation, J. Fluid Mech., doi:10.1017/jfm.2023.331 

Mansouri, Masoud et al (2023), Introduction of localized spin-state transitions in the optical absorption spectrum of Cr-doped GaN, Phys. Rev. B, doi: 10.1103/PhysRevB.107.184103 

Millan, Reisel et al (2023), Effect of framework composition and NH3 on the diffusion of Cu+ in Cu-CHA catalysts predicted by machine-learning accelerated molecular dynamics, arXiv: 2305.12896 [physics.chem-ph]  

Mondal, Sayantan and Qiang Cui (2023), Coacervation-Induced Remodeling of Nanovesicles, J. Phys. Chem. Lett., doi: 10.1021/acs.jpclett.3c00705

Na, Liangyuan et al (2023), Patient Outcome Predictions Improve Operations at a Large Hospital Network, arXiv: 2305.15629 [cs.LG] 

Nabizadehmashhadtoroghi, Mohammad (2023), Physics of Rate Dependent Stress Response in Colloidal Gels Under Flow, Northeastern University ProQuest Dissertations Publishing, 30318208

Nocera, Alberto and Adrian Feiguin (2023), Auger spectroscopy beyond the ultra-short core-hole relaxation time approximation, arXiv: 2304.15001 [cond-mat.str-el]  

Peng, Jiayu et al (2023), Data-Driven, Physics-Informed Descriptors of Cation Ordering in Multicomponent Oxides, arXiv: 2305.01806 [cond-mat.mtrl-sci]   

Pussi, Katariina et al (2023), Atomic Structure of Mn-Doped CoFe2O4 Nanoparticles for Metal–Air Battery Applications, Condens. Matter, doi: 10.3390/condmat8020049 

Shao, Sen et al (2023), Intertwining of Magnetism and Charge Ordering in Kagome FeGe, ACS Nano, doi: 10.1021/acsnano.3c00229 

Shum Yu-Rong et al (2023), Equilibration of Topological Defects at the Deconfined Quantum Critical Point, arXiv: 2305.04771 [cond-mat.str-el]  

Shuman, Daniela et al (2023), “Can Mobility of Care Be Identified From Transit Fare Card Data? A Case Study In Washington D.C.” Findings, doi: 10.32866/001c.75352

Siemenn, A.E. et al. (2023), Fast Bayesian optimization of Needle-in-a-Haystack problems using zooming memory-based initialization (ZoMBI), npj Comput Mater, doi: 10.1038/s41524-023-01048-x 

Tepliakov, Nikita V. et al (2023), Dirac half-semimetallicity and antiferromagnetism in graphene nanoribbon/hexagonal boron nitride heterojunctions, arXiv: 2305.15214 [cond-mat.mtrl-sci] 

Wright, Benjamin et al (2023), SketchOGD: Memory-Efficient Continual Learning, arXiv: 2305.16424 [cs.LG] 

Wu, Xinyi et al (2023), Demystifying Oversmoothing in Attention-Based Graph Neural Networks, arXiv: 2305.16102 [cs.LG] 

Yang, Yiyue (2023), Real-Time Air Quality Forecasting with WRF/Chem-MADRID over Southeastern U.S, Northeastern University ProQuest Dissertations Publishing, 30425792

Zheng, Yuanchao  et al (2023), A novel principal component based method for identifying differentially methylated regions in Illumina Infinium MethylationEPIC BeadChip data, Epigenetics, doi: 10.1080/15592294.2023.2207959 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

Foldit
Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Wearable Health Technology
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
The Forensic Video Exploitation and Analysis (FOVEA) Tool Suite
The Center for Scientific Computing and Data Science Research (CSCDR)
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Sensorimotor Technology Realization in Immersive Virtual Environments (STRIVE)
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Refugee Migration and Return on Social Media
QuEra at the MGHPCC
Predicting Reaction Barrier Heights
Quantum Computing in Renewable Energy Development
Quantifying Risk, Resilience, and Uncertainty with Machine Learning and HPC
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
Predicting Kinetic Solvent Effects
OpenCilk
Offshore Precipitation Capability (OPC) System
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
NASA Arctic-Boreal Vulnerability Experiment (ABoVE)
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Molecular Dynamics for Drug Delivery
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Machine Learning and Wastewater
Lichtman Lab – Center for Brain Science
Measuring Neutrino Mass
Learning-Task Informed Abstractions
Large-Scale Brain Mapping
Invisible Tags
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
FlyNet
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
ElectroVoxels: Modular Self-reconfigurable Robots
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