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October Publications

November 5, 2019

Below is a selection of papers that appeared in October 2019 reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey Cluster, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT’s Engaging Cluster all of which are housed at the MGHPCC.
Connor Bottrell, Maan H. Hani, Hossen Teimoorinia, Sara L. Ellison, Jorge Moreno, Paul Torrey, Christopher C. Hayward, Mallory Thorp, Luc Simard and Lars Hernquist (2019), Deep learning predictions of galaxy merger stage and the importance of observational realism, arXiv: 1910.07031 [astro-ph.GA]
Xiang Chen, Juan Ruiz Ruiz, Nathan Howard, Walter Guttenfelder, Jeff Candy, Jerry Hughes, Robert Granetz, Anne White
(2019),  Prediction of high-k electron temperature fluctuation in an NSTX H-mode plasma, abstract for 61st Annual Meeting of the APS Division of Plasma Physics,
http://meetings.aps.org/Meeting/DPP19/Session/GP10.158
Cedric Flamant, Grigory Kolesov, Efstratios Manousakis, Efthimios Kaxiras (2019), Imaginary-Time Time-Dependent Density Functional Theory and Its Application for Robust Convergence of Electronic States, J. Chem. Theory Comput., doi: 10.1021/acs.jctc.9b00617
Peng Liang and Juan Pablo Trelles (2019), 3D numerical investigation of a free-burning argon arc with metal electrodes using a novel sheath coupling procedure, Plasma Sources Science and Technology, doi: 10.1088/1361-6595/ab4bb6
Peilong Li, Chen Xu, Hao Jin, Chunyang Hu, Yan Luo, Yu Cao, Jomol Mathew, Yunsheng Ma (2019), ChainSDI: A Software-Defined Infrastructure for Regulation-Compliant Home-Based Healthcare Services Secured by Blockchains, IEEE Systems Journal, doi: 10.1109/JSYST.2019.2937930

Wolfram Mobius, Francesca Tesser, Kim M. J. Alards, Roberto Benzi, David R. Nelson, and Federico Tosch (2019), The collective effect of finite-sized inhomogeneities on the spatial spread of populations in two dimensions, arXiv: 1910.05332 [q-bio.PE]

Philip L Pagano, Qi Guo, Chethya Ranasinghe, Evan Schroeder, Kevin Robben, Florian Häse, Hepeng Ye, Kyle Wickersham, Alán Aspuru-Guzik, Dan T. Major, Lokesh Gakhar, Amnon Kohen, Christopher M. Cheatum (2019), Oscillatory Active-site Motions Correlate with Kinetic Isotope Effects in Formate Dehydrogenase, ACS Catal., doi: 10.1021/acscatal.9b03345
Pranay Patil and Anders W. Sandvik (2019), Hilbert Space Fragmentation and Ashkin-Teller Criticalityin Fluctuation Coupled Ising Models, arXiv: 1910.03714 [cond-mat.str-el]

Oliver H. E. Philcox and Daniel J. Eisenstein (2019), Estimating Covariance Matrices for Two- and Three-Point Correlation Function Moments in Arbitrary Survey Geometries,  arXiv: 1910.04764 [astro-ph.CO] 

Juan Ruiz Ruiz (2019), Validation of gyrokinetic simulations in NSTX including comparisons with a synthetic diagnostic for high-k scattering, abstract for 61st Annual Meeting of the APS Division of Plasma Physics, http://meetings.aps.org/Meeting/DPP19/Session/TI2.1
Debjani Sihi, Eric A. Davidson, Kathleen E. Savage, Dong Liang (2019), Simultaneous numerical representation of soil microsite production and consumption of carbon dioxide, methane, and nitrous oxide using probability distribution functions, Global Change Biology, doi: 10.1111/gcb.14855
Nia S. Walker, Rosa Fernández, Jennifer M. Sneed, Valerie J. Paul, Gonzalo Giribet, David Combosch (2019), Differential Gene Expression during Substrate Probing in Larvae of the Caribbean Coral, Molecular Ecology, doi: 10.1111/mec.15265
Cheng-Chiang Wu, Fay-Wei Li, Elena M. Kramer (2019), Large-scale phylogenomic analysis suggests three ancient superclades of the WUSCHEL-RELATED HOMEOBOX transcription factor family in plants, PLoS ONE, doi: 10.1371/journal.pone.0223521
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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