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July 2026 Publications

August 3, 2026

Small matrices with large inverses? Bacterial fitness? HPC testing frameworks? A selection of recent publications featuring research using computers at the MGHPCC.

Adams, Keir et al (2026), Chemical Shift Prediction Beyond the Electronic Structure Limit, via ChemRxiv, doi: 10.26434/chemrxiv.15005989/v1 

Bathe, Klaus-Jürgen et al (2026), The patch tests for verification of machine learning procedures, Computers and Structures, doi: 10.1016/j.compstruc.2026.108331 

S Ben Tahar et al (2026), Growth and patterning in vertebrate limb development: A timescale perspective on skeletal specification, via bioRxiv, doi: 10.1101/2025.03.20.644440 

Cabrera, Rodriguez and Carmen Beatriz (2026), A Bayesian Framework for Modeling Neighborhood-Level Social Determinants of Health, Doctoral Dissertation, Harvard University Graduate School of Arts and Sciences

Egbebi, Oluwatoyosi (2026), Evaluating the Impact of Training Set Composition on Protein Structure Prediction Model Sensitivity to Mutations, Bachelor's Thesis, Harvard University Engineering and Applied Sciences

Feldstein, H., Vijayamohanan, H., Totz, J.F. et al (2026), Shedding light on bacterial fitness in a tug-of-war with liquid crystal emulsions, Nat Commun, doi: 10.1038/s41467-026-75139-w 

Finch, Steven (2026), Small Matrices with Large Inverses: Unimodular 4 × 4 Cases, arXiv: 2607.07688 [math.CO] 

Gaggioli, Filippo et al (2026), Accurate Self-Attention Wavefunctions at Large Scale, https://arxiv.org/pdf/2607.08616 [cond-mat.str-el]

Huang, Yihao et al (2026), Vacuum Fluctuation-Induced State Switching in Degenerate Optical Parametric Oscillators, arXiv: 2606.28178 [quant-ph]  

Kim, Dongyoung et al (2026), Little devils of Neotropical forests: A first molecular phylogeny of stygnid harvestmen with UCE-museomics and a gigamatrix approach (Arachnida, Opiliones, Stygnidae), Systematic Entomology, doi: 10.1111/syen.70060 

Krasnow, N.A., Xu, J.A., Zhang, E. et al (2026), AI-redesigned starting points and outcomes enhance protein evolution, Nature, doi: 10.1038/s41586-026-10820-0 

Li, Jane and Najoung Kim (2026), Linear Representations of Grammaticality in Neural Language Models, arXiv: 2607.15175 [cs.CL] 

Liveoak, Donald et al (2026), Case Study of a Super-eccentric Warm Jupiter Migrating via Equilibrium and Dynamical Tides, arXiv: 2607.16406 [astro-ph.EP] 

Mishra-Sharma, Siddharth (2026), Program Synthesis for Simulation-Based Inference: Joint Model Selection and Parameter Estimation, arXiv: 2607.17540 [cs.LG]  

Karen Nakamura, Lauren Milechin (2026), A Flexible HPC Testing Framework Built on Buildkite, PEARC '26: Proceedings of the Practice and Experience in Advanced Research Computing 2026: Resilient Roots + Empowered Communities, Article No.: 97, Pages 1 - 2, doi: 10.1145/3785462.3815830  

Negro, Luca Dal et al (2026), Mid-Infrared Single-Photon Detection via Enhanced Cross-Phase Modulation in Topology-Optimized Epsilon-Near-Zero Dual-Wavelength Nanocavities, arXiv: 2607.10472 [physics.optics]  

Pires, Ivan S. et al (2026), Polymer Molecular Weight Influences Cancer Cell Surface Retention and Cytokine Presentation by Layer-by-Layer Nanoparticles, ACS Nano, doi: 10.1021/acsnano.6c02817 

Thompson, Kelsey et al (2026), Harmonized Metagenomic Signatures of the Gut Microbiome Reveal Robust Species, Functions, and Strain Links to Inflammatory Bowel Disease, Gastroenterology, doi: 10.1053/j.gastro.2026.06.023

Toney, Jacob W. et al (2026), ElemeNet: Multiscale Molecular Machine Learning with Uncertainty Quantification Across the Periodic Table, arXiv: 2606.30961  

Wang, Zihan and Huanyuan Shan (2026), A hidden reionization prior biases cosmological inference, arXiv: 2606.27903 [ astro-ph.CO] 

Zier, Oliver et al (2026), A Novel Implementation of Self-Interacting Dark Matter in arepo, arXiv: 2607.05504 [astro-ph.CO] 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
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