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May 2025 Publications

June 2, 2025

Topological Photonics? Vanishing Drude Weight? Improving Tandem Fluency? A selection of recent publications featuring research using the MGHPCC.

Abouelkomsan, A. et al (2025), Compressible Quantum Liquid with Vanishing Drude Weight, Physical review Letters, doi: 10.1103/PhysRevLett.134.176501

Adkins, Jamie L. et al (2025), Immunogenetic diversity and transcriptomic response to fibropapillomatosis in Hawaiian green sea turtles, Endangered Species Research, doi: 10.3354/esr 

Barrazza-Alfaro, Marcelo et al (2025), exoALMA. XVI. Predicting Signatures of Large-scale Turbulence in Protoplanetary Disks, The Astrophysical Journal Letters, doi: 10.3847/2041-8213/adc42d

Boyer, Jarad et al (2025), Learning to Dissipate Energy in Oscillatory State-Space Models, arXiv: 2505.12171 [cs.LG]

Carrivale, Costanza et al (2025), Precise Standard-Model predictions for polarised Z-boson pair production and decay at the LHC, arXiv: 2505.09686 [hep-ph] 

Chiu, Wei-chi et al (2025), Strain-Induced Charge Density Waves with Emergent Topological States in Monolayer NbSe2, ACS Nano, doi: 10.1021/acsnano.4c13478 

Choi, Jason et al (2025), Resolving Conflicting Constraints in Multi-Agent Reinforcement Learning with Layered Safety, arXiv: 2505.02293 [cs.RO] 

España-Irla, Goretti et al (2025), Functional Connectivity Patterns Following Mild Traumatic Brain Injury and the Association With Longitudinal Cognitive Function, Human Brain Mapping, doi: 10.1002/hbm.70237 

Fromer, Jenna et al (2025), Batched Bayesian Optimization by Maximizing the Probability of Including the Optimum, Machine Learning and Deep Learning, doi: 10.1021/acs.jcim.5c00214 

Ghorashi, Ali et al (2025), Interpretable Artificial Intelligence for Topological Photonics, arXiv: 2505.10485 [physics.optics]  

Gomes, Luisa et al (2025), Solvent Dynamics in Gel Polymer Electrolytes for Lithium–Sulfur Batteries, ACS Nano, doi: 10.1021/acsnano.5c01797

HoKoo, Bon et al (2025), Improving Tandem Fluency Through Utilization of Deep Learning to Predict Human Motion in Exoskeleton, Actuators, doi: 10.3390/act14060260

Huang, Cheng-Hsin et al (2025), Designing Ultraporous Mesostructured Silica Nanoparticles for the Remediation of Per- and Polyfluoroalkyl Substances, ACS Nano, doi: 10.1021/acsnano.5c02008 

Kenia, R. et al. (2025), Topology-Preserving Deep Supervision for 3D Axon Centerline Segmentation Using Partially Annotated Data, 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), Houston, TX, USA, doi: 10.1109/ISBI60581.2025.10981036 

Le Roy, Emmie J. et al (2025), Impact of Climate Variability and Change on the Surface Ozone Response to NOx Emissions Reductions, Environmental Science and Technology, doi: 10.1021/acs.est.5c01347

Li, Dion et al (2025), Role of ion acoustic instability in magnetic reconnection, arXiv: 2505.08983  

Lokmanoglu, Ayse D. et al (2025), VisTopics: A Visual Semantic Unsupervised Approach to Topic Modeling of Video and Image Data, arXiv: 2505.14868 [cs.IR]  

Naidu, Rohan P. et al (2025), A Cosmic Miracle: A Remarkably Luminous Galaxy at zspec = 14.44 Confirmed with JWST, arXiv: 2505.11263 [astro-ph.GA] 

Narrett, Isaac S. et al (2025), Impact plasma amplification of the ancient lunar dynamo, Science, doi: 10.1126/sciadv.adr7401

Pantelopulos, George A. et al (2025), Kinetics and Mechanism of Phase Separation in Ternary Lipid Mixtures Containing APP C99: Atomistic vs Coarse-Grained MD Simulations, Journal of Chemical Theory and Computation, doi: 10.1021/acs.jctc.5c00016 

Peng, Shirui et al (2025), Capturing Multiscale Dynamics in the Oceanic Mixed Layer. Part I: Hydrostatic Simulations, Authorea, doi: 10.22541/au.174585712.26266872/v1 

Sakhya, Anup Pradham et al (2025), Complex electronic topography and magnetotransport in an in-plane ferromagnetic kagome metal, arXiv: 2505.09891 [cond-mat.mtrl-sci] 

Shin, Ethan Youngin and Michael F. Howland (2025), Accelerated Bayesian Calibration and Uncertainty Q​uantification ​of R​ans T​urbulence M​odel P​arameters for S​tratified A​tmospheric B​oundary L​ayer F​lows, arXiv: 2505.18756 [physics.flu-dyn] 

Sullivan, J.M. et al (2025), High-redshift Millennium and Astrid galaxies in effective field theory at the field level,  arXiv: 2505.03626 [astro-ph.CO] 

Uddin, Shiekh Zia et al (2025), AI-Driven Robotics for Free-Space Optics, arXiv: 2505.17985 [physics.optics] 

Volkov, Victor V. et al (2025), Red blood cell Raman microscopy: modelling sub-cellular biochemistry, Royal Soc Chemistry PCCP, doi: 10.1039/d5cp00172b

Wuitchik, D.M. et al (2025), Outside your shell: exploring genetic variation in two congeneric marine snails across a latitude and temperature gradient, BMC Genomics, doi: 10.1186/s12864-025-11603-z 

Yan, Xingchi et al (2025), Identifying intermolecular interactions in single-molecule localization microscopy, PNAS, doi: 10.1073/pnas.2409426122 

Zhang, Gemma et al (2025), Modeling Galaxy Surveys with Hybrid SBI, arXiv: 2505.13591 [astro-ph.CO] https://arxiv.org/pdf/2505.13591 

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Accelerating Rendering Power
Sailing the Symbiosis Seascape
Discovering Evolution’s Master Switches
Evaluating Health Benefits of Stricter US Air Quality Standards
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Revolutionizing Materials Design with Computational Modeling
Simulating Large Biomolecular Assemblies
How Monkeys - and Machines - See in 3D
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