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December 2024 Publications

January 7, 2025

Automatic transcription of music? Synthetic high spin Chern insulators? Uncovering social determinants of health disparities? A selection of recent publications featuring research using the MGHPCC.

Abraham, Conor B. et al (2024), Elucidating the Mechanism of Recognition and Binding of Heparin to Amyloid Fibrils of Serum Amyloid A, Biochemistry, doi: 10.1021/acs.biochem.4c00529 

Alqassar​, Jasmine D. et al (2024), De Novo Genome Assembly and Annotation for the Synanthropic Webbing Clothes Moth (Tineola bisselliella): A Globally Distributed, Economically Important Pest, Genome Biology and Evolution, doi: 10.1093/gbe/evae266 

Bhosle​, Amrisha et al (2024), Response of the gut microbiome​ and metabolome to dietary​ fiber in healthy dogs​, mSystems, doi: 10.1128/msystems.00452-24 

Coleman, S. M.​ et al (2024), Considerations Regarding High Oil Density Bioreactor-Scale Fermentations of Yarrowia lipolytica Using CFD Modeling and Experimental Validation, Biotechnology Journal, doi: 10.1002/biot.202400506

Derby, Bradford et al (2024), Source Separation & Automatic Transcription for Music, arXiv: 2412.06703v1 [cs.SD] 

Guida, Dominick Peter​ (2024), Characterizing and Modeling Heterogeneity in Alkaline Zn-MnO2 Batteries Using Synchrotron CT and EDXRD, Northeastern University ProQuest Dissertations & Theses

H​ong, Seungbo et al (2024), Data science shows that entropy correlates with accelerated zeolite crystallization in Monte Carlo simulations​, J. Chem. Phys., doi: 10.1063/5.0238061 

​Hung, Yi-Chun et al (2024), Engineering Majorana Kramers Pairs In Synthetic High Spin Chern Insulators, arXiv: 2412.08632 [cond-mat.str-el] 

Karnik, Sathwik et al (2024), Embodied Red Teaming for Auditing Robotic Foundation Models, arXiv: 2411.18676 [cs.RO]  

Zifan Li, Sara Seager, Benjamin Weiss (2024), Interior and Gravity Field Models for Uranus Suggest Mixed-composition Interior: Implications for the Uranus Orbiter and Probe, arXiv: 2412.06010 [astro-ph.EP] 

​Mojitaba, Mohammad ​et al (2024), Electrostatic Orientation of Optically Asymmetric Janus Particles, ACS Omega, doi: 10.1021/acsomega.4c05669 

Pantelopulos, George A. et al (2024), Exploring the kinetics and​ mechanism of phase​ separation in ternary lipid mixtures containing​ APP C99 using atomistic vs coarse-grained MD​ simulations​, via bioRxiv, doi: 10.1101/2024.12.31.630974

Park, Young-Jin et al (2024), Identifying Reliable Predictions in Detection Transformers, arXiv: 2412.01782 [cs.CV]  

Reddy, Aidan P. et al (2024), Anti-topological crystal and non-Abelian liquid in twisted semiconductor bilayers, arXiv: 2411.19898 [cond-mat.mes-hall]  

Rodriguez, Carmen B. et al (2024), A Bayesian Mixture Model Approach to Examining Neighborhood Social Determinants of Health Disparities in Endometrial Cancer Care in Massachusetts, arXiv: 2412.07134 [stat.AP] 

Tinney et al. (2024), Choroid Plexus Volume Only Increases Early​ after Traumatic Brain Injury and Only in Those​ with Positive Head Computed Tomography Scans, Neurotrauma Reports, doi: 10.1089/neur.2024.0093

Wang, Shuo et al (2024), Multimodal Machine Learning for Materials Science: Discovery of Novel Li-Ion Solid Electrolytes, Chemistry of Materials, doi: 10.1021/acs.chemmater.4c02257 

Woodward, Nathaniel S. et al (2024), Product Manifold Machine Learning for Physics, arXiv: 2412.07033 [hep-ph] 

Yang, Sibin et al (2024), Dynamic structure factor of a spin-1/2 Heisenberg chain with long-range interactions, arXiv: 2412.15168 [cond-mat.str-el] 

Zhang, Difei Zhang (2024), Machine learning the Ising transition: A comparison between discriminative and generative approaches, arXiv: 2411.19370 [cond-mat.dis-nn]  

Zhang, L., Xiao, R., Jin, T. et al (2024), Degradable poly(β-amino ester) microparticles for cleansing products and food fortification, Nat. Chem. Eng., doi: 10.1038/s44286-024-00151-0 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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